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ARSC T3E Users' Newsletter 197, June 9, 2000

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CUG Report

The following excerpts are from the trip reports of two ARSC staff members, Liam Forbes and Kurt Carlson, who attended the recent Holland CUG. They're intended to give the flavor of the CUG and share some information relevant to readers of this newsletter. This is extracted from hand-written notes taken during talks... if you want definitive info, visit http://www.cray.com/ and see numerous white papers and other documents.

General Impressions

Notes:

 

MPI_SM_POOL Variable and "Remote Protocol Queue"

There are a number of environment variables which you can set to control resources available to your MPI jobs. They're documented in "man mpi" on the T3E.

An ARSC user recently received this error message:

-MPI- FATAL: Remote protocol queue full
This is the Cray discussion in a problem report on the subject:
The "Remote protocol queue full" error means the shared memory queue area used for buffering messages has filled up. This typically occurs when a PE(s) is sending messages to another PE faster than that PE can receive them. The solution is to use environment variable MPI_SM_POOL to increase the size of the shared memory pool. The default size for MPI_SM_POOL is 8192 bytres. See section 2.7 of "Message Passing Toolkit: MPI Programmer's Manual" for additional information. MPI will be changed in a future release so that send operations will block when a "queue full" condition occurs.

 

Quick-Tip Q & A

A:{{ What's the best defense against bears?

We got five answers from four readers in Minnesota, Mississippi, and Alaska:

Assuming 4-legged bears with claws are your concern, and your wolverine's loyalty is doubtful, here's additional advice. This is from a flier by Alaskan bear expert, Larry Aumiller, entitled, "Bear Facts":
Close Encounters: What To Do
If you see a bear, avoid it if you can. Give the bear every opportunity to avoid you. If you do encounter a bear at close distance, remain calm. Attacks are rare. Chances are, you are not in danger. Most bears are interested only in protecting food, cubs or their "personal space." Once the threat is removed, they will move on. Remember the following:

Identify Yourself: Let the bear know you are human. Talk to the bear in a normal voice. Wave your arms. [...] You may try to back away slowly diagonally, but if the bear follows, stop and hold your ground.

Don't Run: You can't outrun bear. They have been clocked at speeds up to 35 mph, and like dogs, they will chase fleeing animals. Bears often make bluff charges, sometimes to within 10 feet of their adversary, without making contact. Continue waving your arms and talking to the bear. If the bear gets too close, raise your voice and be more aggressive. Bang pots and pans. Use noisemakers. Never imitate bear sounds or make a high-pitched squeal.

If Attacked: If a bear actually makes contact, surrender! Fall to the ground and play dead. Lie flat on your stomach, or curl up in a ball with your hands behind your neck. Typically, a bear will break off its attack once it feels the threat has been eliminated. [...] In rare instances, particularly with black bears, an attacking bear may perceive a person as food. If the bear continues biting you long after you assume a defensive posture, it likely is a predatory attack. Fight back vigorously.

Protection
Firearms should never be used as an alternative to common-sense approaches to bear encounters. If you are inexperienced with a firearm in emergency situations, you are more likely to be injured by a gun than a bear. It is illegal to carry firearms in some of Alaska's national parks, so check before you go.

A .300-Magnum rifle or a 12-gauge shotgun with rifled slugs are appropriate weapons if you have to shoot a bear. Heavy handguns such as a .44-Magnum may be inadequate in emergency situations, especially in untrained hands.

Defensive aerosol sprays which contain capsicum (red pepper extract) have been used with some success for protection against bears. These sprays may be effective at a range of 6-8 yards. If discharged upwind or in a vehicle, they can disable the user. Take appropriate precautions. If you carry a spray can, keep it handy and know how to use it.
 

Q: I re-use the same qsub script in different directories, copying it around as I change data sets.

The first command in the script is a "cd" right back to the directory from which I submit the script (the "cd" is required because NQS always starts the job in my home directory).

Thus, I must update the "cd" command in my script whenever I copy it to a new directory. It's BAD NEWS when I forget! Any advice?

[ Answers, questions, and tips graciously accepted. ]

 


Current Editors:
Thomas J. Baring ARSC Web Specialist ph: 907-450-8619
Donald Bahls ARSC User Consultant ph: 907-450-8674
Arctic Region Supercomputing Center
University of Alaska Fairbanks
PO Box 756020
Fairbanks AK 99775-6020
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