ARSC Academic Systems Software Index

If you would like to request a new software package or version be considered for installation in the centralized software stack on an ARSC system, please complete the Software Request form.

NamePacman & Linux WorkstationsFishDescriptionUAF Affiliates Only
ACML (AMD Core Math Library)Optimized math library for AMD processors; Contains BLAS, LAPACK and FFT routines.
ANTLRANTLR is a widely-used open-source parser and translator generator tool
AutoconfM4 macros used to produce shell scripts for automagically configuring software source code pkgs.
AutomakeWorks in conjuntion with autoconf and processes makefile.am files.
AvizoTool for visualizing, manipulating, and understanding 3D scientific and industrial data.
BlenderBlender is the free open source 3D content creation suite, available for all major operating systems under the GNU General Public License.
boostThe boost libraries are an extension of C++ standard routines and are slated for future additions to the C++ standard.
bowtieBowtie is an ultrafast, memory-efficient short read aligner.
CCECray Compiling Environment
CDOCDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.
charmparallel c++ library, Required to build NAMD and ChaNGa. Note that NAMD includes a Charm++ tarball which is the version built here.
CMakeCross Platform Make
ComsolMultiphysics is a finite element analysis and solver software package for various physics and engineering applications. (Access Restrictions)
CUBITGeometry and Mesh Generation Toolkit (Access Restrictions)
CUDACUDA is NVIDIA's parallel computing architecture that utilizes system GPUs.
CULACULA is a GPU-accelerated linear algebra library that utilizes the NVIDIA CUDA parallel computing architecture
eclipsesdk which provides templates used to begin developing code
FerretFerret is an interactive computer visualization and analysis environment designed for large gridded data sets.
ffmepgTools to record, convert, stream and play multimedia content
FFTWFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions
GarliGARLI is a program that performs phylogenetic inference using the maximum-likelihood criterion.
Gaussianprovides state-of-the-art capabilities for electronic structure modeling. (Access Restrictions)
GaussViewGUI setup and viewing utility for Gaussian
GEOSGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS).
GITFast version control system.
GMTGeneric Mapping Tools.
GNU CompilersThe GNU compiler suite.
GNUPlotGNUPlot is a portable command-line driven graphing utility
Google Earth3D viewing software for satellite imagery, maps, terrain, 3D buildings, etc.
GraceGrace is a WYSIWYG 2D plotting tool for the X Window System and M*tif.
GrADSAn interactive desktop tool that is used for easy access, manipulation, and visualization of earth science data.
GSL (GNU Scientific Library)The GNU Scientific Library.
GVGNU gv allows to view and navigate through PostScript and PDF documents
HDF5Heirarchical Data Format library and utilities
IDL/EnviGraphics & Data Representation Libraries & Toolkits
IDVIntegrated Data Viewer
IM/IMAIM/IMa are progams for population genetic analysis
IMA2IMa2 is a progam for population genetic analysis
ImageMagickA software suite to create, edit, and compose bitmap images
Intel CompilersThe intel compilers. (access restrictions)
JasperThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part
Java Development KitThe Java compiler and runtime environment
MatlabInteractive matrix laboratory for tasks involving matrices, graphics and general numerical computation (Access Restrictions)
MexncMatlab netcdf interface
MigrateEstimation of population sizes and gene flow using the coalescent.
NAMDScalable Molecular Dynamics
NanoGNU editor similar to pico
NCLNCAR Command Language
NCO
NCViewNetcdf file viewer
NeditX windows text editor
NetCDFUnidata Network Common Data Form library
netcdf_toolboxUsed with mexnc and matlab to process netcdf files.
NWChem (open source)A computational chemistry simulation package.
OctaveGNU Octave is a high-level language, primarily intended for numerical computations.
OpenFOAMOpenFOAM is a free, open source CFD software package
OpenMPIThe Open MPI Project is an open source MPI-2 implementation that is developed and maintained by a consortium of academic, research, and industry partners.
osgOpenSceneGraph, scene-graph based C++ graphics library.
PAPIPAPI provides a consistent interface to hardware performance counters.
ParaviewAn open-source, multi-platform data analysis and visualization application.
PetScPortable, Extensible Toolkit for Scientific Computation.
PGIThe Portland Group, Inc. Compiler Suite includes compilers for C, C++, Fortran 77, Fortran 90, and Fortran 95.
pNetCDFParallel netcdf
PythonAn interpreted, interactive, object-oriented programming language
qtUsing Qt, you can write web-enabled applications once and deploy them across desktop, mobile and embedded operating systems. Needed for paraview.
ROpen source statistical package based on S.
SubversionAn open-source revision control system.
szipSzip compression software, providing lossless compression of scientific data.
TAUTAU Performance System is a portable profiling and tracing toolkit for performance analysis of parallel programs.
TotalView DebuggerX-window source-level debugger for parallel programs
TrinityTrinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.
udunitsUnit conversion and manipulation package.
VaporVisualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers
Vis5D+A free OpenGL-based volumetric visualization program for scientific datasets in 3+ dimensions.
VisITScientific Visualization Software
vtkVisualization ToolKit library for graphics development and data analysis.
wgrib2Utility for the manipulation of grib2 files.
xemacsx11 version of emacs.
yasmYasm is a complete rewrite of the NASM assembler.
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